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Move java and resources into src/main folder

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    ./commands/AddToListPropertyCommand.java
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    ./commands/ChangeListPropertyCommand.java
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    ./commands/ConnectionCommand.java
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    ./commands/CreateComponentCommand.java
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    ./commands/DeleteComponentCommand.java
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    ./commands/DeleteLinkCommand.java
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    ./commands/MoveDownListPropertyCommand.java
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    ./commands/MoveUpListPropertyCommand.java
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    ./commands/PasteComponentCommand.java
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    ./commands/RemoveFromListPropertyCommand.java
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    ./commands/RoleConnectionCommand.java
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Remove old preferences page, as no longer required with new scenario editor

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    ./preferences/PreferenceInitializer.java
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    ./preferences/ScenarioPreferencePage.java
SAVARA-312 Initial work to trigger validation of protocols. Defined savara preferences and a validation property specifically to guard against unnecessary validation

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Remove commented out lines

SAVARA-154 Change simulation log to be html to enable errors to be displayed in red

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    ./simulate/ScenarioDesignerSimulationLauncher.java
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Add indication of error stream state in debug

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    ./simulate/ScenarioDesignerSimulationLauncher.java
SAVARA-154 Update to reflect role initialization status on the diagram

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    ./simulate/ScenarioDesignerSimulationLauncher.java
SAVARA-297 Add documentation for adding service interfaces to a BPMN2 choreography

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    ./simulate/ScenarioSimulationLauncher.java
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Fix sca issue

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    ./simulate/ScenarioSimulationLauncher.java
Apply temporary fix to allow SCA composite to be located on classpath

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    ./simulate/ScenarioSimulationLauncher.java
Fix issue with using simulator as external process, to ensure that parsers and role simulators are correctly initialised

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    ./simulate/ScenarioSimulationDialog.java
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    ./simulate/ScenarioSimulationLauncher.java
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Fix issue with updating model role when simulator changes

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    ./simulate/ScenarioSimulationDialog.java
SAVARA-280 - changed plugin name for protocol simulator

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    ./simulate/ScenarioSimulationDialog.java
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SAVARA-280 update related to using scribble protocols for simulation

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    ./simulate/ScenarioSimulationDialog.java
SAVARA-246 changed scenario description from attribute to element

SAVARA-245 - don't establish project refs on generation - just use role model as means of determining classpath

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    ./simulate/ScenarioSimulationDialog.java
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    ./simulate/ScenarioSimulationLauncher.java
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Add simulation log back in

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    ./editor/SimulationEntityFocusAction.java
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    ./simulate/ScenarioDesignerSimulationLauncher.java
SAVARA-236 merge multiple java project output contents to avoid classpath conflicts

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    ./simulate/ScenarioSimulationLauncher.java
Add detection of jre problem, and fix simulation file problem

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    ./simulate/ScenarioDesignerSimulationLauncher.java
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    ./simulate/ScenarioSimulationDialog.java
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SAVARA-231 - store simulation files and use to initialise the dialog when simulation next performed

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    ./simulate/ScenarioSimulationDialog.java
Detect 'no simulator' events and reset the node

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    ./simulate/ScenarioDesignerSimulationLauncher.java
Added Java project classpath for each model to the launched simulator's classpath

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    ./simulate/ScenarioSimulationDialog.java
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    ./simulate/ScenarioSimulationLauncher.java
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    ./simulate/ScenarioSimulationUILauncher.java
SAVARA-229 now remote launching simulator with Java projects and classpaths included

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    ./simulate/ScenarioSimulationLauncher.java
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    ./simulate/ScenarioSimulationUILauncher.java
Update to use modified role simulator interface

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    ./simulate/ScenarioDesignerSimulationLauncher.java
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    ./simulate/ScenarioSimulationDialog.java
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    ./simulate/ScenarioSimulationUILauncher.java
SAVARA-229 - Execute simulation using launch approach, to setup classpath with both role simulators and user's own Java code in Eclipse projects

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    ./editor/SimulateScenarioAction.java
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    ./simulate/ScenarioDesignerSimulationLauncher.java
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    ./simulate/ScenarioDetails.java
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    ./simulate/ScenarioSimulationAction.java
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    ./simulate/ScenarioSimulationDialog.java
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    ./simulate/ScenarioSimulationImages.java
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    ./simulate/ScenarioSimulationLaunchConfigurationConstants.java
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    ./simulate/ScenarioSimulationLauncher.java
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    ./simulate/ScenarioSimulationMainTab.java
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    ./simulate/ScenarioSimulationTabGroup.java
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    ./simulate/ScenarioSimulationUILauncher.java
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    ./simulate/UISimulationHandler.java
Fixed build issues

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    ./simulate/ScenarioSimulationDialog.java
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SAVARA-201 - enable dialog to scroll when many roles

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    ./simulate/ScenarioSimulationDialog.java
SAVARA-212 added suppport for saving selected models against scenario file

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    ./simulate/ScenarioSimulationDialog.java
JBIDE-8835 - fixed npe when running in Indigo

Fixed undo issue following deletion of a role with message links

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    ./commands/DeleteComponentCommand.java