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[WFCORE-4874] Turn pre-computed annotation index loading error into a warning and print related description

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[WFCORE-4375] Provide ability to easily apply certain JBoss module libraries to all deployments running in a server

[WFCORE-4375] Added some logs when the files are added as resource roots

- Use resource name for created module

[WFCORE-4375] Add posibility to scan subfolders for jar files

[WFCORE-4375] Do not process class path entries if they are directory

[WFCORE-4375] Add control tolimit number of files processed in a global directory

[WFCORE-4375] Fix checkstyle

[WFCORE-4375] More work in progress

[WFCORE-4375] Increase the logs of ExternalModuleSpecService when jar files are processed

[WFCORE-4375] Improve error messages

[WFCORE-4375] Do not initialize the jars TreeSet if there is no available paths poiting to a jar file

[WFCORE-4375] Add paths sorted by full path name, change error message including exception trace

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[WFCORE-4129] WFLYSRV0266: Server home is set to... info msg in domain for RPM installation

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[WFCORE-4129] WFLYSRV0266: Server home is set to... info msg in domain for RPM installation

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[WFCORE-4234] WARN if jboss-deployment-structure.xml excludes non-existent dependency.

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[WFCORE-4233] WARN if jboss-deployment-structure.xml excludes non-existent subsystem

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[WFCORE-3905] Improve SuspendController code

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[WFCORE-3905] Improve SuspendController code

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[WFCORE-4145] Add a note about --admin-only being deprecated in favor of --start-mode=admin-only to the help output.

[Git Configuration]: git backend for loading/storing the configuration XML for wildfly

Having it working properly in standalone.

Deleting content of the configuration directory before cloning so we have the logging.properties on boot.

Fixing too many commits on boot

Allowing for git repository creation with the special repo 'local'.

Snapshots can take a comment that will be used as commit comment.

Adding support for managed content.

Removing domain support

Using tags for snapshot management

Integrating Elytron

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WFCORE-3950 Unclear exception when specifying non-archive file as resource-root

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WFCORE-3662 If an exception occurs resuming an activity the exception is lost

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[WFCORE-3527] Eliminating dead OSGi code - partial revert of commit f458353d5ff

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[WFCORE-3434] update vaultNotInitializedException level to DEBUG

[WFCORE-3434] update vaultNotInitializedException level to DEBUG

[WFCORE-3145] Comment out unused logger methods

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WFCORE-2652 WARNING on boot of server in case where JBOSS_HOME is not properly set on Windows

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Merge pull request #322 from soul2zimate/JBEAP-8247-2.1.x

Jbeap 8247 2.1.x

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[WFCORE-2511]: overlay, redeploy-links should ignore unknown deployments.

It was first thought that if the deployment didn't exist we should fail. It appears we were wrong so now we just ignore those deployments.

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[WFCORE-1507] Expose in-vm ModelControllerClient creation via a capability Addresses [WFCORE-1964] by having clear contracts for whether an internal client should always execute with 'SuperUser' RBAC perms Also addresses [WFCORE-2327] by creating a standardized way of establishing a client that acts as SuperUser

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[WFCORE-1529] Tweak management thread pools to decrease thread churn

1) Bump managment-handler-thread pool thread timeout from 1 to 10 mins to retain threads during active CLI sessions

2) ServerService pool on a standalone server keeps 1 core thread

3) On a domain server, it keeps 3, as comms with the HC involve more async tasks

4) ServerService core pool size can be set via system property

5) HostControllerService pool keeps 1 core thread

With these settings light CLI activity doesn't produce pool churn. The management-handler-thread pool will still churn if activity is infrequent, with gaps longer than 10 mins.

Repeated complex tasks like deploy ops will still produce churn in ServerService thread pool.

In both cases where churn still happens, the alternative is never releasing threads and wasting resources, which seems worse than a bit of churn.

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[WFCORE-2223] Drop pointless validation of jboss.modules.dir

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[WFCORE-2229]: Create serverside operations to redeploy deployments affected by an overlay.

Adding support for a new redeploy-affected method on deployment-overlays.

In domain mode, this is using transformers instead of the classic handlers: thus the operation is transofrmed in a redeploy operation for the target server-groups.

This impacts the ServerResolverOperation to convert locally the transformed operation into the real redeploy of deployments.

Adding a flag to redeploy affected when removing an overlay link.

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[WFCORE-2182] Distinguish lookup misses using the vault from 'system' problems with the vault

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[WFCORE-2182][JBEAP-8247] Distinguish lookup misses using the vault from 'system' problems with the vault

(cherry picked from commit e4e95924faad644b896dfd7ac4eae66f8ee2fc4c)

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[WFCORE-2182] Make VaultReaderException a RuntimeException; consolidate usage

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[WFCORE-2182][JBEAP-8247] Make VaultReaderException a RuntimeException; consolidate usage

(cherry picked from commit e9ee9178b75dd99c30a5f4245799f50a02f40585)

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[WFCORE-2009] Correct attribute validation to reflect that SSL configuration can now come from either an ssl-context or a security-realm.

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Merge branch 'WFCORE-1858' into remoting5_integration

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[WFCORE-1846]: Exploding subdeployment of an unexploded deployment should fail.

If the target path of an 'explode' operation doesn't exist we now fail.

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